You can choose either singularity or enroot in the scripts ```benchmark_single_node.sbatch``` and ```benchmark_multi_node.sbatch```.
You can choose either singularity or enroot in the scripts ```benchmark_single_node.sbatch``` and ```benchmark_multi_node.sbatch```.
The input arguments are:
Chnage the following settings in `benchmark_sbatch_submit.sh`:
1. Data dimention,
1. Data dimention,
2. Number of nodes,
2. Number of nodes,
3. Number of gpus per node,
3. Number of gpus per node,
...
@@ -71,7 +71,7 @@ The input arguments are:
...
@@ -71,7 +71,7 @@ The input arguments are:
We will average the benchmark performance over the iterations. The maximum usable (without a OOM error) batch size is 256 and 128 for single and multi-node, respectively.
We will average the benchmark performance over the iterations. The maximum usable (without a OOM error) batch size is 256 and 128 for single and multi-node, respectively.
```
```
cd Berzelius-nnU-Net-Benchmark && mkdir -p sbatch_out
cd Berzelius-nnU-Net-Benchmark && mkdir -p sbatch_out
