Update file run_benchmark_single_node.sh

PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh

@@ -23,11 +23,8 @@ MODULE_VERSION=21.11.0
 WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/PyTorch/Segmentation/nnUNet
 CONTAINER_DIR=/proj/nsc_testing/xuan/containers/${MODULE_NAME}_${MODULE_VERSION}.sif
 
-cd $WORK_DIR
-
-rm -f results/$LOG_DIR
-srun apptainer exec --nv -B ${PWD}/data:/data -B ${PWD}/results:/results $CONTAINER_DIR bash -c "cd /workspace/nnunet_pyt && python scripts/benchmark.py --mode train --gpus ${3} --dim ${1} --batch_size ${4} --nodes ${2} --amp --logname='$LOG_DIR'" 
-
+rm -f $WORK_DIR/results/$LOG_DIR
+srun apptainer exec --nv --pwd /workspace/nnunet_pyt -B ${WORK_DIR}/data:/data -B ${WORK_DIR}/results:/results $CONTAINER_DIR python scripts/benchmark.py --mode train --gpus ${3} --dim ${1} --batch_size ${4} --nodes ${2} --amp --logname='$LOG_DIR'
 
 EOT