Update 2 files

- /MLPerf/training/image_segmentation/pytorch/U-Net3D.def
- /MLPerf/training/image_segmentation/pytorch/benchmark.txt

MLPerf/training/image_segmentation/pytorch/U-Net3D.def

@@ -26,4 +26,5 @@ pip install --disable-pip-version-check -r requirements.txt
 
 git clone https://github.com/neheller/kits19
 cd kits19
-pip3 install -r requirements.txt
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+pip3 install -r requirements.txt
+rm -rf ../kits19
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MLPerf/training/image_segmentation/pytorch/benchmark.txt

@@ -5,10 +5,18 @@ MODLE_NAME=U-Net3D
 CONTAINER_DIR=/proj/nsc_testing/xuan/containers/${MODLE_NAME}.sif
 WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/MLPerf/training/image_segmentation/pytorch
 
+
+
+mkdir -p $WORK_DIR/raw-data $WORK_DIR/data $WORK_DIR/results
+
+
 cd $WORK_DIR
-mkdir raw-data-dir
-cd raw-data-dir
+
+To download the data please follow the instructions:
+
 git clone https://github.com/neheller/kits19
-cd kits19
-pip3 install -r requirements.txt
-python3 -m starter_code.get_imaging
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+apptainer exec $CONTAINER_DIR bash -c "cd kits19 && python3 -m starter_code.get_imaging"
+
+-B ${WORK_DIR}/data:/data -B ${WORK_DIR}/results:/results 
+
+-B ${WORK_DIR}/raw-data:/raw-data 
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