From e91af8923dabe1423ee334c4ef7ed1451f017b7f Mon Sep 17 00:00:00 2001
From: Xuan Gu <xuan.gu@liu.se>
Date: Wed, 27 Sep 2023 19:35:35 +0000
Subject: [PATCH] Update file nnunet_for_pytorch.def

---
 .../nnUNet/nnunet_for_pytorch.def             | 26 +++++++++++++++++++
 1 file changed, 26 insertions(+)
 create mode 100644 PyTorch/Segmentation/nnUNet/nnunet_for_pytorch.def

diff --git a/PyTorch/Segmentation/nnUNet/nnunet_for_pytorch.def b/PyTorch/Segmentation/nnUNet/nnunet_for_pytorch.def
new file mode 100644
index 0000000..f580334
--- /dev/null
+++ b/PyTorch/Segmentation/nnUNet/nnunet_for_pytorch.def
@@ -0,0 +1,26 @@
+Bootstrap: localimage
+From: /proj/nsc_testing/xuan/containers/nvidia_pytorch_21.11-py3.sif
+
+
+%environment
+
+export PYTHONNOUSERSITE=True
+
+
+%post 
+
+VERSION=21.11.0
+
+mkdir /workspace/nnunet_pyt 
+cd /workspace/nnunet_pyt
+wget --content-disposition https://api.ngc.nvidia.com/v2/resources/nvidia/nnunet_for_pytorch/versions/$VERSION/zip -O nnunet_for_pytorch_$VERSION.zip
+unzip nnunet_for_pytorch_21.11.0.zip
+
+pip install --disable-pip-version-check -r requirements.txt
+pip install monai==0.8.0 --no-dependencies
+pip uninstall -y torchtext
+
+curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip"
+unzip -qq awscliv2.zip
+./aws/install
+rm -rf awscliv2.zip aws
\ No newline at end of file
-- 
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