diff --git a/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh b/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh index 5e632665b34c2a9ad6985483e6ff9a4df089a91e..485eff950e2aac9a759ced4722ca1eeffba669b6 100644 --- a/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh +++ b/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh @@ -19,11 +19,6 @@ cat <<EOT > $SBATCH_DIR #SBATCH --output=$SBATCH_OUT_DIR ##SBATCH --reservation=devel -MODULE_NAME=nnunet_for_pytorch -MODULE_VERSION=21.11.0 -WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/PyTorch/Segmentation/nnUNet -CONTAINER_DIR=/proj/nsc_testing/xuan/containers/${MODULE_NAME}_${MODULE_VERSION}.sif - rm -f $WORK_DIR/results/$LOG_DIR apptainer exec --nv -B ${WORK_DIR}/data:/data -B ${WORK_DIR}/results:/results --pwd /workspace/nnunet_pyt $CONTAINER_DIR python scripts/benchmark.py --mode ${5} --gpus ${3} --dim ${1} --batch_size ${4} --amp --logname='$LOG_DIR'