diff --git a/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh b/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh index 0e3718d454691f192f6a7f0161f089d206c7f699..95071f9a6b5f73c5c2be91e3a84b239c31bd15ed 100644 --- a/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh +++ b/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh @@ -4,6 +4,7 @@ MODULE_NAME=nnunet_for_pytorch MODULE_VERSION=21.11.0 WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/PyTorch/Segmentation/nnUNet SBATCH_DIR=$WORK_DIR/sbatch_scripts/benchmark_dim${1}_nodes${2}_gpus${3}_batchsize${4}_iteration${5}.sbatch +SBATCH_OUT_DIR=$WORK_DIR/sbatch_out/benchmark_dim${1}_nodes${2}_gpus${3}_batchsize${4}_iteration${5}.out LOG_DIR=benchmark_dim${1}_nodes${2}_gpus${3}_batchsize${4}_amp_iteration${5}.json mkdir -p $WORK_DIR/sbatch_out $WORK_DIR/sbatch_scripts @@ -14,7 +15,7 @@ cat <<EOT > $SBATCH_DIR #SBATCH --nodes=${2} #SBATCH --gpus=${3} #SBATCH --time=0-0:10:00 -#SBATCH --output=sbatch_out/benchmark_dim${1}_nodes${2}_gpus${3}_batchsize${4}_iteration${5}.out +#SBATCH --output=$SBATCH_OUT_DIR #SBATCH --reservation=devel MODULE_NAME=nnunet_for_pytorch @@ -22,8 +23,6 @@ MODULE_VERSION=21.11.0 WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/PyTorch/Segmentation/nnUNet CONTAINER_DIR=/proj/nsc_testing/xuan/containers/${MODULE_NAME}_${MODULE_VERSION}.sif - - cd $WORK_DIR rm -f results/$LOG_DIR