diff --git a/README.md b/README.md index 314d0fe2310b1ab80e59933ce55aa5b0474faeed..95cf5fc1efe29dd860432ea07d6148175a96a559 100644 --- a/README.md +++ b/README.md @@ -47,13 +47,12 @@ apptainer exec --nv -B ${PWD}/data:/data -B ${PWD}/results:/results --nv nvidia_ apptainer exec --nv -B ${PWD}/data:/data -B ${PWD}/results:/results --nv nvidia_nnu-net_for_pytorch_$VERSION.sif cd /workspace/nnunet_pyt && python preprocess.py --task 01 --dim 2 ``` -<!-- -With Enroot +<!-- With Enroot ``` enroot import 'docker://berzeliushub/nvidia_nnu-net_for_pytorch:$VERSION' enroot create --name nnunet berzeliushub+nvidia_nnu-net_for_pytorch+$VERSION.sqsh enroot start --rw --mount ${PWD}/data:/data --mount ${PWD}/results:/results nnunet cd /workspace/nnunet_pyt && python download.py --task 01 && python preprocess.py --task 01 --dim 2" --> -``` + - Submit the job to Berzelius