diff --git a/PyTorch/Segmentation/nnUNet/benchmark.txt b/PyTorch/Segmentation/nnUNet/benchmark.txt index 6cf9593895057f8cc139091c8ce5750d4a065e1d..54fdf4970788d31a3dd7e7d866fa4468aff69c61 100644 --- a/PyTorch/Segmentation/nnUNet/benchmark.txt +++ b/PyTorch/Segmentation/nnUNet/benchmark.txt @@ -32,4 +32,6 @@ AttributeError: can't set attribute Solution: pip install torchmetrics==0.6.0, works. +# Muiti-node is not supported in 21.11.0 yet but only in the most recent code on GitHub. + # 2023-09-28: Not working on the devel reservation \ No newline at end of file diff --git a/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh b/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh index 0c442f861dcda394d55001ccafb872a42bee919d..2a17927306cba7fdce3628a2704511b8b7259cc1 100644 --- a/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh +++ b/PyTorch/Segmentation/nnUNet/run_benchmark_single_node.sh @@ -25,7 +25,7 @@ WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/PyTorch/Segmentation/nnUNet CONTAINER_DIR=/proj/nsc_testing/xuan/containers/${MODULE_NAME}_${MODULE_VERSION}.sif rm -f $WORK_DIR/results/$LOG_DIR -apptainer exec --nv -B ${WORK_DIR}/data:/data -B ${WORK_DIR}/results:/results --pwd /workspace/nnunet_pyt $CONTAINER_DIR python scripts/benchmark.py --mode train --gpus ${3} --dim ${1} --batch_size ${4} --nodes ${2} --amp --logname='$LOG_DIR' +apptainer exec --nv -B ${WORK_DIR}/data:/data -B ${WORK_DIR}/results:/results --pwd /workspace/nnunet_pyt $CONTAINER_DIR python scripts/benchmark.py --mode train --gpus ${3} --dim ${1} --batch_size ${4} --amp --logname='$LOG_DIR' EOT