diff --git a/nnunet_for_pytorch.def b/nnunet_for_pytorch.def index 185e71cd72998b520093159f64268ffaec422c7f..ecdd68ce65e0bc51851933c5003969b50603c4c1 100644 --- a/nnunet_for_pytorch.def +++ b/nnunet_for_pytorch.def @@ -1,2 +1,25 @@ Bootstrap: localimage From: /proj/nsc_testing/xuan/containers/cuda_11.1.1-cudnn8-runtime-ubuntu18.04.sif + + +%environment + +export PYTHONNOUSERSITE=True + + +%post + +mkdir /workspace/nnunet_pyt +cd /workspace/nnunet_pyt +VERSION=21.11.0 +wget --content-disposition https://api.ngc.nvidia.com/v2/resources/nvidia/nnunet_for_pytorch/versions/$VERSION/zip -O nnunet_for_pytorch_$VERSION.zip +unzip nnunet_for_pytorch_21.11.0.zip + +pip install --disable-pip-version-check -r requirements.txt +pip install monai==0.8.0 --no-dependencies +pip uninstall -y torchtext + +curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" +unzip -qq awscliv2.zip +./aws/install +rm -rf awscliv2.zip aws \ No newline at end of file