diff --git a/MLPerf/training/image_segmentation/pytorch/U-Net3D.def b/MLPerf/training/image_segmentation/pytorch/U-Net3D.def index 8771fe0db7b856d5a056f0409caec16acf8839a3..7b4a50c605bb708386d1950f47b4d208a58b21db 100644 --- a/MLPerf/training/image_segmentation/pytorch/U-Net3D.def +++ b/MLPerf/training/image_segmentation/pytorch/U-Net3D.def @@ -22,4 +22,8 @@ mv training/image_segmentation/pytorch/* /workspace/unet3d/ rm -rf training pip install --upgrade pip -pip install --disable-pip-version-check -r requirements.txt \ No newline at end of file +pip install --disable-pip-version-check -r requirements.txt + +git clone https://github.com/neheller/kits19 +cd kits19 +pip3 install -r requirements.txt \ No newline at end of file diff --git a/MLPerf/training/image_segmentation/pytorch/benchmark.txt b/MLPerf/training/image_segmentation/pytorch/benchmark.txt new file mode 100644 index 0000000000000000000000000000000000000000..716fc2139be5ca67b45d17823683108ea0374b38 --- /dev/null +++ b/MLPerf/training/image_segmentation/pytorch/benchmark.txt @@ -0,0 +1,14 @@ + + +MODLE_NAME=U-Net3D +# MODULE_VERSION=21.11.0 +CONTAINER_DIR=/proj/nsc_testing/xuan/containers/${MODLE_NAME}.sif +WORK_DIR=/proj/nsc_testing/xuan/berzelius-benchmarks/MLPerf/training/image_segmentation/pytorch + +cd $WORK_DIR +mkdir raw-data-dir +cd raw-data-dir +git clone https://github.com/neheller/kits19 +cd kits19 +pip3 install -r requirements.txt +python3 -m starter_code.get_imaging \ No newline at end of file