From d825125cd7882497966a423a8367af08caafff8b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?William=20L=C3=B6vfors?= <william.lovfors@liu.se> Date: Tue, 21 Feb 2023 07:56:36 +0000 Subject: [PATCH] Updated the readme --- Readme.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Readme.md b/Readme.md index dee3908..ed8b36d 100644 --- a/Readme.md +++ b/Readme.md @@ -38,11 +38,11 @@ If you only want to use some of the frameworks, please install the packages list ## odes2py To install the converter without downloading the examples, [download this file](https://gitlab.liu.se/willo18/alternative-modelling/-/raw/master/odes2py.py?inline=false). Otherwise download/clone [the full git project](https://gitlab.liu.se/willo18/alternative-modelling/). To convert to SBML you need to either install [Tellurium](#tellurium-via-antimony) or [yaml2sbml](#yaml2sbml) (see instructions below). -## MeDigiT +## SUND First, install numpy (`pip install numpy`), then follow the instructions on how to install [MeDigiT](https://gitlab.liu.se/ISBgroup/Toolboxes/medigit). If you have git already installed, you can most likely install both numpy and MeDigiT via the following command: ``` -pip install numpy && git clone https://gitlab.liu.se/ISBgroup/Toolboxes/medigit.git -cd medigit && pip install . && cd .. +pip install numpy && git clone https://gitlab.liu.se/ISBgroup/Toolboxes/sund.git +cd sund && pip install . && cd .. ``` (note the dot at the end) After the installation, the downloaded `medigit` folder can be deleted. @@ -74,4 +74,4 @@ This modeling framework is not based on python, rather a computational language Packages for Julia can be easily installed from within the language. Either launch the Julia console and [enter the pkg REPL, and install](https://docs.julialang.org/en/v1/stdlib/Pkg/) the package via: `add DifferentialEquations`, or add the package directly from the script you are running (see julia/main.jl) for an example of this. ## Casadi -Casadi can be downloaded from [here](https://web.casadi.org/get/). [Version 3.4.5 is also available in the MATLAB/Casadi folder](https://gitlab.liu.se/willo18/alternative-modelling/-/tree/master/Examples/MATLAB/Casadi/casadi-3.4.5). \ No newline at end of file +Casadi can be downloaded from [here](https://web.casadi.org/get/). [Version 3.4.5 is also available in the MATLAB/Casadi folder](https://gitlab.liu.se/willo18/alternative-modelling/-/tree/master/Examples/MATLAB/Casadi/casadi-3.4.5). -- GitLab