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+dbo:predecessor,dbo:commander,0.16609128,dbp:locationcountry +dbp:publisher,dbo:author,0.18220726,dbp:parent +dbo:producer,dbp:artist,0.6608386,dbp:artist +dbp:spouse,dbp:education,0.3250142,dbo:spouse +dbo:college,dbp:education,0.742814,dbo:deathplace diff --git a/Neural graph module/loss_a0.1_e50_b8 b/Neural graph module/loss_a0.1_e50_b8 new file mode 100644 index 0000000000000000000000000000000000000000..7a8a2092e76637380d66f1a54433db6dd62a37bd --- /dev/null +++ b/Neural graph module/loss_a0.1_e50_b8 @@ -0,0 +1 @@ +[5.571724585124424, 5.555871830667768, 5.527821094649179, 5.508293989726475, 5.487793234416417, 5.474524024554661, 5.459395016942706, 5.456178917203631, 5.450260656220572, 5.441645990099226, 5.4305480820792065, 5.426060461997986, 5.415000339916774, 5.403450056484767, 5.398498776980809, 5.386524568285261, 5.380222102573939, 5.3738896812711445, 5.369027144568307, 5.362112028258188, 5.351012631825038, 5.349169928686959, 5.3459252289363315, 5.341955191748482, 5.335924700328282, 5.329608018057687, 5.325289372035435, 5.316059531484331, 5.316460456166949, 5.31416221005576, 5.313663227217538, 5.307156934056963, 5.30150477205004, 5.294568957601275, 5.296395346096584, 5.291880117143903, 5.286564421653748, 5.290026085717337, 5.287465947014945, 5.286537405422756, 5.284834323610578, 5.277639051846095, 5.277994441986084, 5.273067879676819, 5.266493163790021, 5.265891354424613, 5.2635238715580535, 5.2592038086482455, 5.254022972924369, 5.2520079476492745] \ No newline at end of file diff --git a/Neural graph module/ngm.ipynb b/Neural graph module/ngm.ipynb index 0b03885395c7c3a0c08a106eff7bd49f9a197fbe..b84cd327e95012a6e4ef76dd4834dea35ac53b07 100644 --- a/Neural graph module/ngm.ipynb +++ b/Neural graph module/ngm.ipynb @@ -2,9 +2,18 @@ "cells": [ { "cell_type": "code", - "execution_count": 41, + "execution_count": 1, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "b:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\tqdm\\auto.py:22: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n", + " from .autonotebook import tqdm as notebook_tqdm\n" + ] + } + ], "source": [ "import datasets\n", "import torch\n", @@ -21,7 +30,7 @@ }, { "cell_type": "code", - "execution_count": 42, + "execution_count": 2, "metadata": {}, "outputs": [], "source": [ @@ -31,7 +40,7 @@ }, { "cell_type": "code", - "execution_count": 43, + "execution_count": 3, "metadata": {}, "outputs": [ { @@ -51,7 +60,7 @@ }, { "cell_type": "code", - "execution_count": 44, + "execution_count": 4, "metadata": {}, "outputs": [], "source": [ @@ -82,7 +91,7 @@ }, { "cell_type": "code", - "execution_count": 45, + "execution_count": 5, "metadata": {}, "outputs": [], "source": [ @@ -221,7 +230,7 @@ }, { "cell_type": "code", - "execution_count": 46, + "execution_count": 6, "metadata": {}, "outputs": [], "source": [ @@ -245,7 +254,7 @@ }, { "cell_type": "code", - "execution_count": 47, + "execution_count": 7, "metadata": {}, "outputs": [], "source": [ @@ -384,7 +393,7 @@ }, { "cell_type": "code", - "execution_count": 48, + "execution_count": 8, "metadata": {}, "outputs": [], "source": [ @@ -396,7 +405,7 @@ }, { "cell_type": "code", - "execution_count": 49, + "execution_count": 9, "metadata": {}, "outputs": [ { @@ -410,7 +419,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 2052/2052 [00:00<00:00, 2215.97it/s]" + "100%|██████████| 2052/2052 [00:01<00:00, 2039.76it/s]\n" ] }, { @@ -418,24 +427,17 @@ "output_type": "stream", "text": [ "Finished with batches\n", - "features: ['[CLS] who are in the liang chow club? [SEP] [ obj ] [SEP] liang _ chow [SEP] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD]'] mask: tensor([[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0,\n", - " 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\n", - " 0, 0, 0, 0, 0, 0, 0, 0, 0]]) label_index tensor(105) valids ('http://dbpedia.org/ontology/wikipagewikilink http://dbpedia.org/ontology/wikipageredirects http://dbpedia.org/ontology/club http://dbpedia.org/property/headcoach http://dbpedia.org/property/formercoach http://dbpedia.org/property/club http://dbpedia.org/ontology/coach http://dbpedia.org/ontology/owner http://xmlns.com/foaf/0.1/primarytopic',)\n", - "valid features: tensor([[ 101, 2073, 2003, 1996, 2697, 2284, 2046, 2029, 1996, 11093,\n", - " 2314, 6223, 1029, 102, 1031, 27885, 3501, 1033, 102, 11093,\n", - " 1035, 2314, 102, 0, 0, 0, 0, 0, 0, 0,\n", + "features: ['[CLS] give me the total number of architect of the buildings whose one of the architect was louis d. astorino? [SEP] [ obj ] [SEP] louis _ d _ astorino [SEP] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD] [PAD]'] mask: tensor([[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,\n", + " 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\n", + " 0, 0, 0, 0, 0, 0, 0, 0, 0]]) label_index tensor(6) valids ('',)\n", + "valid features: tensor([[ 101, 2129, 2116, 2372, 2024, 2045, 1997, 1996, 3029, 9403,\n", + " 2012, 2572, 13473, 2140, 3726, 2368, 1029, 102, 1031, 27885,\n", + " 3501, 1033, 102, 2572, 13473, 2140, 3726, 2368, 102, 0,\n", " 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\n", " 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\n", - " 0, 0, 0, 0, 0, 0, 0]]) valid mask: tensor([[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0,\n", - " 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\n", - " 0, 0, 0, 0, 0, 0, 0, 0, 0]]) valid label_index tensor(439)\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "\n" + " 0, 0, 0, 0, 0, 0, 0]]) valid mask: tensor([[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,\n", + " 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\n", + " 0, 0, 0, 0, 0, 0, 0, 0, 0]]) valid label_index tensor(382)\n" ] } ], @@ -480,19 +482,9 @@ }, { "cell_type": "code", - "execution_count": 50, + "execution_count": 10, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "Some weights of the model checkpoint at bert-base-uncased were not used when initializing BertModel: ['cls.predictions.transform.dense.bias', 'cls.seq_relationship.weight', 'cls.predictions.bias', 'cls.predictions.decoder.weight', 'cls.predictions.transform.dense.weight', 'cls.predictions.transform.LayerNorm.weight', 'cls.predictions.transform.LayerNorm.bias', 'cls.seq_relationship.bias']\n", - "- This IS expected if you are initializing BertModel from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).\n", - "- This IS NOT expected if you are initializing BertModel from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).\n" - ] - } - ], + "outputs": [], "source": [ "SPARQL_ENDPOINT = \"https://dbpedia.org/sparql\"\n", "\n", @@ -503,15 +495,12 @@ "headers = {\n", " 'Accept': 'application/sparql-results+json',\n", " 'Content-Type': 'application/x-www-form-urlencoded',\n", - "}\n", - "\n", - "# Initialize model\n", - "model = NgmOne(device, relations)" + "}" ] }, { "cell_type": "code", - "execution_count": 51, + "execution_count": 11, "metadata": {}, "outputs": [], "source": [ @@ -558,34 +547,91 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": 12, + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Some weights of the model checkpoint at bert-base-uncased were not used when initializing BertModel: ['cls.predictions.transform.dense.weight', 'cls.predictions.decoder.weight', 'cls.predictions.transform.LayerNorm.bias', 'cls.seq_relationship.bias', 'cls.seq_relationship.weight', 'cls.predictions.transform.LayerNorm.weight', 'cls.predictions.bias', 'cls.predictions.transform.dense.bias']\n", + "- This IS expected if you are initializing BertModel from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).\n", + "- This IS NOT expected if you are initializing BertModel from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).\n" + ] + } + ], + "source": [ + "# Initialize model\n", + "model = NgmOne(device, relations)" + ] + }, + { + "cell_type": "code", + "execution_count": 13, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "1 Train 1.9950409718922206 , Valid 6.086820043836322\n", - "2 Train 1.974610483646393 , Valid 6.082748562949044\n", - "3 Train 1.9063476758343834 , Valid 6.075958919525147\n", - "4 Train 1.868471566268376 , Valid 6.070137473515102\n", - "5 Train 1.8407497908387864 , Valid 6.063200610024588\n" + "1 Train 5.57195748261043 , Valid 5.578094809395926\n", + "2 Train 5.554840326309204 , Valid 5.575157519749233\n", + "3 Train 5.535530410494123 , Valid 5.556477464948382\n", + "4 Train 5.5098095859800065 , Valid 5.548334584917341\n", + "5 Train 5.489036996023995 , Valid 5.543145302363804\n", + "6 Train 5.469569032532828 , Valid 5.535323524475098\n", + "7 Train 5.4597343172345845 , Valid 5.533391925266811\n", + "8 Train 5.45037328515734 , Valid 5.532663140978132\n", + "9 Train 5.447723358018058 , Valid 5.530487305777413\n", + "10 Train 5.438918685913086 , Valid 5.524020862579346\n", + "11 Train 5.430657751219613 , Valid 5.52385219846453\n", + "12 Train 5.428742098808288 , Valid 5.524552549634661\n", + "13 Train 5.416880416870117 , Valid 5.52349694115775\n", + "14 Train 5.410125701768058 , Valid 5.524705042157854\n", + "15 Train 5.401101180485317 , Valid 5.513791574750628\n", + "16 Train 5.396071638379778 , Valid 5.509561429704939\n" + ] + }, + { + "ename": "KeyboardInterrupt", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[1;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", + "\u001b[1;32mc:\\Users\\Albin\\Documents\\TDDE19\\codebase\\Neural graph module\\ngm.ipynb Cell 13\u001b[0m in \u001b[0;36m<cell line: 16>\u001b[1;34m()\u001b[0m\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=24'>25</a>\u001b[0m valid_obj_relations \u001b[39m=\u001b[39m sample_batched_train[\u001b[39m4\u001b[39m]\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=26'>27</a>\u001b[0m \u001b[39m# Forward pass\u001b[39;00m\n\u001b[1;32m---> <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=27'>28</a>\u001b[0m output \u001b[39m=\u001b[39m model(train, train_mask)\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=29'>30</a>\u001b[0m preds \u001b[39m=\u001b[39m [relations[np\u001b[39m.\u001b[39margmax(pred)\u001b[39m.\u001b[39mitem()]\u001b[39mfor\u001b[39;00m pred \u001b[39min\u001b[39;00m output\u001b[39m.\u001b[39mdetach()\u001b[39m.\u001b[39mcpu()\u001b[39m.\u001b[39mnumpy()]\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=30'>31</a>\u001b[0m relation_loss \u001b[39m=\u001b[39m []\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\torch\\nn\\modules\\module.py:1130\u001b[0m, in \u001b[0;36mModule._call_impl\u001b[1;34m(self, *input, **kwargs)\u001b[0m\n\u001b[0;32m 1126\u001b[0m \u001b[39m# If we don't have any hooks, we want to skip the rest of the logic in\u001b[39;00m\n\u001b[0;32m 1127\u001b[0m \u001b[39m# this function, and just call forward.\u001b[39;00m\n\u001b[0;32m 1128\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m (\u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_backward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_pre_hooks \u001b[39mor\u001b[39;00m _global_backward_hooks\n\u001b[0;32m 1129\u001b[0m \u001b[39mor\u001b[39;00m _global_forward_hooks \u001b[39mor\u001b[39;00m _global_forward_pre_hooks):\n\u001b[1;32m-> 1130\u001b[0m \u001b[39mreturn\u001b[39;00m forward_call(\u001b[39m*\u001b[39m\u001b[39minput\u001b[39m, \u001b[39m*\u001b[39m\u001b[39m*\u001b[39mkwargs)\n\u001b[0;32m 1131\u001b[0m \u001b[39m# Do not call functions when jit is used\u001b[39;00m\n\u001b[0;32m 1132\u001b[0m full_backward_hooks, non_full_backward_hooks \u001b[39m=\u001b[39m [], []\n", + "\u001b[1;32mc:\\Users\\Albin\\Documents\\TDDE19\\codebase\\Neural graph module\\ngm.ipynb Cell 13\u001b[0m in \u001b[0;36mNgmOne.forward\u001b[1;34m(self, tokenized_seq, tokenized_mask)\u001b[0m\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=15'>16</a>\u001b[0m tokenized_mask \u001b[39m=\u001b[39m tokenized_mask\u001b[39m.\u001b[39mto(\u001b[39mself\u001b[39m\u001b[39m.\u001b[39mdevice)\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=16'>17</a>\u001b[0m \u001b[39mwith\u001b[39;00m torch\u001b[39m.\u001b[39mno_grad():\n\u001b[1;32m---> <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=17'>18</a>\u001b[0m x \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mbert\u001b[39m.\u001b[39;49mforward(tokenized_seq, attention_mask\u001b[39m=\u001b[39;49mtokenized_mask)\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=18'>19</a>\u001b[0m x \u001b[39m=\u001b[39m x[\u001b[39m0\u001b[39m][:,\u001b[39m0\u001b[39m,:]\u001b[39m.\u001b[39mto(\u001b[39mself\u001b[39m\u001b[39m.\u001b[39mdevice)\n\u001b[0;32m <a href='vscode-notebook-cell:/c%3A/Users/Albin/Documents/TDDE19/codebase/Neural%20graph%20module/ngm.ipynb#X14sZmlsZQ%3D%3D?line=19'>20</a>\u001b[0m x \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mlinear(x)\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\transformers\\models\\bert\\modeling_bert.py:1014\u001b[0m, in \u001b[0;36mBertModel.forward\u001b[1;34m(self, input_ids, attention_mask, token_type_ids, position_ids, head_mask, inputs_embeds, encoder_hidden_states, encoder_attention_mask, past_key_values, use_cache, output_attentions, output_hidden_states, return_dict)\u001b[0m\n\u001b[0;32m 1005\u001b[0m head_mask \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mget_head_mask(head_mask, \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mconfig\u001b[39m.\u001b[39mnum_hidden_layers)\n\u001b[0;32m 1007\u001b[0m embedding_output \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39membeddings(\n\u001b[0;32m 1008\u001b[0m input_ids\u001b[39m=\u001b[39minput_ids,\n\u001b[0;32m 1009\u001b[0m position_ids\u001b[39m=\u001b[39mposition_ids,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 1012\u001b[0m past_key_values_length\u001b[39m=\u001b[39mpast_key_values_length,\n\u001b[0;32m 1013\u001b[0m )\n\u001b[1;32m-> 1014\u001b[0m encoder_outputs \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mencoder(\n\u001b[0;32m 1015\u001b[0m embedding_output,\n\u001b[0;32m 1016\u001b[0m attention_mask\u001b[39m=\u001b[39;49mextended_attention_mask,\n\u001b[0;32m 1017\u001b[0m head_mask\u001b[39m=\u001b[39;49mhead_mask,\n\u001b[0;32m 1018\u001b[0m encoder_hidden_states\u001b[39m=\u001b[39;49mencoder_hidden_states,\n\u001b[0;32m 1019\u001b[0m encoder_attention_mask\u001b[39m=\u001b[39;49mencoder_extended_attention_mask,\n\u001b[0;32m 1020\u001b[0m past_key_values\u001b[39m=\u001b[39;49mpast_key_values,\n\u001b[0;32m 1021\u001b[0m use_cache\u001b[39m=\u001b[39;49muse_cache,\n\u001b[0;32m 1022\u001b[0m output_attentions\u001b[39m=\u001b[39;49moutput_attentions,\n\u001b[0;32m 1023\u001b[0m output_hidden_states\u001b[39m=\u001b[39;49moutput_hidden_states,\n\u001b[0;32m 1024\u001b[0m return_dict\u001b[39m=\u001b[39;49mreturn_dict,\n\u001b[0;32m 1025\u001b[0m )\n\u001b[0;32m 1026\u001b[0m sequence_output \u001b[39m=\u001b[39m encoder_outputs[\u001b[39m0\u001b[39m]\n\u001b[0;32m 1027\u001b[0m pooled_output \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mpooler(sequence_output) \u001b[39mif\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mpooler \u001b[39mis\u001b[39;00m \u001b[39mnot\u001b[39;00m \u001b[39mNone\u001b[39;00m \u001b[39melse\u001b[39;00m \u001b[39mNone\u001b[39;00m\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\torch\\nn\\modules\\module.py:1130\u001b[0m, in \u001b[0;36mModule._call_impl\u001b[1;34m(self, *input, **kwargs)\u001b[0m\n\u001b[0;32m 1126\u001b[0m \u001b[39m# If we don't have any hooks, we want to skip the rest of the logic in\u001b[39;00m\n\u001b[0;32m 1127\u001b[0m \u001b[39m# this function, and just call forward.\u001b[39;00m\n\u001b[0;32m 1128\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m (\u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_backward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_pre_hooks \u001b[39mor\u001b[39;00m _global_backward_hooks\n\u001b[0;32m 1129\u001b[0m \u001b[39mor\u001b[39;00m _global_forward_hooks \u001b[39mor\u001b[39;00m _global_forward_pre_hooks):\n\u001b[1;32m-> 1130\u001b[0m \u001b[39mreturn\u001b[39;00m forward_call(\u001b[39m*\u001b[39m\u001b[39minput\u001b[39m, \u001b[39m*\u001b[39m\u001b[39m*\u001b[39mkwargs)\n\u001b[0;32m 1131\u001b[0m \u001b[39m# Do not call functions when jit is used\u001b[39;00m\n\u001b[0;32m 1132\u001b[0m full_backward_hooks, non_full_backward_hooks \u001b[39m=\u001b[39m [], []\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\transformers\\models\\bert\\modeling_bert.py:603\u001b[0m, in \u001b[0;36mBertEncoder.forward\u001b[1;34m(self, hidden_states, attention_mask, head_mask, encoder_hidden_states, encoder_attention_mask, past_key_values, use_cache, output_attentions, output_hidden_states, return_dict)\u001b[0m\n\u001b[0;32m 594\u001b[0m layer_outputs \u001b[39m=\u001b[39m torch\u001b[39m.\u001b[39mutils\u001b[39m.\u001b[39mcheckpoint\u001b[39m.\u001b[39mcheckpoint(\n\u001b[0;32m 595\u001b[0m create_custom_forward(layer_module),\n\u001b[0;32m 596\u001b[0m hidden_states,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 600\u001b[0m encoder_attention_mask,\n\u001b[0;32m 601\u001b[0m )\n\u001b[0;32m 602\u001b[0m \u001b[39melse\u001b[39;00m:\n\u001b[1;32m--> 603\u001b[0m layer_outputs \u001b[39m=\u001b[39m layer_module(\n\u001b[0;32m 604\u001b[0m hidden_states,\n\u001b[0;32m 605\u001b[0m attention_mask,\n\u001b[0;32m 606\u001b[0m layer_head_mask,\n\u001b[0;32m 607\u001b[0m encoder_hidden_states,\n\u001b[0;32m 608\u001b[0m encoder_attention_mask,\n\u001b[0;32m 609\u001b[0m past_key_value,\n\u001b[0;32m 610\u001b[0m output_attentions,\n\u001b[0;32m 611\u001b[0m )\n\u001b[0;32m 613\u001b[0m hidden_states \u001b[39m=\u001b[39m layer_outputs[\u001b[39m0\u001b[39m]\n\u001b[0;32m 614\u001b[0m \u001b[39mif\u001b[39;00m use_cache:\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\torch\\nn\\modules\\module.py:1130\u001b[0m, in \u001b[0;36mModule._call_impl\u001b[1;34m(self, *input, **kwargs)\u001b[0m\n\u001b[0;32m 1126\u001b[0m \u001b[39m# If we don't have any hooks, we want to skip the rest of the logic in\u001b[39;00m\n\u001b[0;32m 1127\u001b[0m \u001b[39m# this function, and just call forward.\u001b[39;00m\n\u001b[0;32m 1128\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m (\u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_backward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_pre_hooks \u001b[39mor\u001b[39;00m _global_backward_hooks\n\u001b[0;32m 1129\u001b[0m \u001b[39mor\u001b[39;00m _global_forward_hooks \u001b[39mor\u001b[39;00m _global_forward_pre_hooks):\n\u001b[1;32m-> 1130\u001b[0m \u001b[39mreturn\u001b[39;00m forward_call(\u001b[39m*\u001b[39m\u001b[39minput\u001b[39m, \u001b[39m*\u001b[39m\u001b[39m*\u001b[39mkwargs)\n\u001b[0;32m 1131\u001b[0m \u001b[39m# Do not call functions when jit is used\u001b[39;00m\n\u001b[0;32m 1132\u001b[0m full_backward_hooks, non_full_backward_hooks \u001b[39m=\u001b[39m [], []\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\transformers\\models\\bert\\modeling_bert.py:489\u001b[0m, in \u001b[0;36mBertLayer.forward\u001b[1;34m(self, hidden_states, attention_mask, head_mask, encoder_hidden_states, encoder_attention_mask, past_key_value, output_attentions)\u001b[0m\n\u001b[0;32m 477\u001b[0m \u001b[39mdef\u001b[39;00m \u001b[39mforward\u001b[39m(\n\u001b[0;32m 478\u001b[0m \u001b[39mself\u001b[39m,\n\u001b[0;32m 479\u001b[0m hidden_states: torch\u001b[39m.\u001b[39mTensor,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 486\u001b[0m ) \u001b[39m-\u001b[39m\u001b[39m>\u001b[39m Tuple[torch\u001b[39m.\u001b[39mTensor]:\n\u001b[0;32m 487\u001b[0m \u001b[39m# decoder uni-directional self-attention cached key/values tuple is at positions 1,2\u001b[39;00m\n\u001b[0;32m 488\u001b[0m self_attn_past_key_value \u001b[39m=\u001b[39m past_key_value[:\u001b[39m2\u001b[39m] \u001b[39mif\u001b[39;00m past_key_value \u001b[39mis\u001b[39;00m \u001b[39mnot\u001b[39;00m \u001b[39mNone\u001b[39;00m \u001b[39melse\u001b[39;00m \u001b[39mNone\u001b[39;00m\n\u001b[1;32m--> 489\u001b[0m self_attention_outputs \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mattention(\n\u001b[0;32m 490\u001b[0m hidden_states,\n\u001b[0;32m 491\u001b[0m attention_mask,\n\u001b[0;32m 492\u001b[0m head_mask,\n\u001b[0;32m 493\u001b[0m output_attentions\u001b[39m=\u001b[39;49moutput_attentions,\n\u001b[0;32m 494\u001b[0m past_key_value\u001b[39m=\u001b[39;49mself_attn_past_key_value,\n\u001b[0;32m 495\u001b[0m )\n\u001b[0;32m 496\u001b[0m attention_output \u001b[39m=\u001b[39m self_attention_outputs[\u001b[39m0\u001b[39m]\n\u001b[0;32m 498\u001b[0m \u001b[39m# if decoder, the last output is tuple of self-attn cache\u001b[39;00m\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\torch\\nn\\modules\\module.py:1130\u001b[0m, in \u001b[0;36mModule._call_impl\u001b[1;34m(self, *input, **kwargs)\u001b[0m\n\u001b[0;32m 1126\u001b[0m \u001b[39m# If we don't have any hooks, we want to skip the rest of the logic in\u001b[39;00m\n\u001b[0;32m 1127\u001b[0m \u001b[39m# this function, and just call forward.\u001b[39;00m\n\u001b[0;32m 1128\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m (\u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_backward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_pre_hooks \u001b[39mor\u001b[39;00m _global_backward_hooks\n\u001b[0;32m 1129\u001b[0m \u001b[39mor\u001b[39;00m _global_forward_hooks \u001b[39mor\u001b[39;00m _global_forward_pre_hooks):\n\u001b[1;32m-> 1130\u001b[0m \u001b[39mreturn\u001b[39;00m forward_call(\u001b[39m*\u001b[39m\u001b[39minput\u001b[39m, \u001b[39m*\u001b[39m\u001b[39m*\u001b[39mkwargs)\n\u001b[0;32m 1131\u001b[0m \u001b[39m# Do not call functions when jit is used\u001b[39;00m\n\u001b[0;32m 1132\u001b[0m full_backward_hooks, non_full_backward_hooks \u001b[39m=\u001b[39m [], []\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\transformers\\models\\bert\\modeling_bert.py:419\u001b[0m, in \u001b[0;36mBertAttention.forward\u001b[1;34m(self, hidden_states, attention_mask, head_mask, encoder_hidden_states, encoder_attention_mask, past_key_value, output_attentions)\u001b[0m\n\u001b[0;32m 409\u001b[0m \u001b[39mdef\u001b[39;00m \u001b[39mforward\u001b[39m(\n\u001b[0;32m 410\u001b[0m \u001b[39mself\u001b[39m,\n\u001b[0;32m 411\u001b[0m hidden_states: torch\u001b[39m.\u001b[39mTensor,\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 417\u001b[0m output_attentions: Optional[\u001b[39mbool\u001b[39m] \u001b[39m=\u001b[39m \u001b[39mFalse\u001b[39;00m,\n\u001b[0;32m 418\u001b[0m ) \u001b[39m-\u001b[39m\u001b[39m>\u001b[39m Tuple[torch\u001b[39m.\u001b[39mTensor]:\n\u001b[1;32m--> 419\u001b[0m self_outputs \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mself(\n\u001b[0;32m 420\u001b[0m hidden_states,\n\u001b[0;32m 421\u001b[0m attention_mask,\n\u001b[0;32m 422\u001b[0m head_mask,\n\u001b[0;32m 423\u001b[0m encoder_hidden_states,\n\u001b[0;32m 424\u001b[0m encoder_attention_mask,\n\u001b[0;32m 425\u001b[0m past_key_value,\n\u001b[0;32m 426\u001b[0m output_attentions,\n\u001b[0;32m 427\u001b[0m )\n\u001b[0;32m 428\u001b[0m attention_output \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39moutput(self_outputs[\u001b[39m0\u001b[39m], hidden_states)\n\u001b[0;32m 429\u001b[0m outputs \u001b[39m=\u001b[39m (attention_output,) \u001b[39m+\u001b[39m self_outputs[\u001b[39m1\u001b[39m:] \u001b[39m# add attentions if we output them\u001b[39;00m\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\torch\\nn\\modules\\module.py:1130\u001b[0m, in \u001b[0;36mModule._call_impl\u001b[1;34m(self, *input, **kwargs)\u001b[0m\n\u001b[0;32m 1126\u001b[0m \u001b[39m# If we don't have any hooks, we want to skip the rest of the logic in\u001b[39;00m\n\u001b[0;32m 1127\u001b[0m \u001b[39m# this function, and just call forward.\u001b[39;00m\n\u001b[0;32m 1128\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m (\u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_backward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_hooks \u001b[39mor\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_forward_pre_hooks \u001b[39mor\u001b[39;00m _global_backward_hooks\n\u001b[0;32m 1129\u001b[0m \u001b[39mor\u001b[39;00m _global_forward_hooks \u001b[39mor\u001b[39;00m _global_forward_pre_hooks):\n\u001b[1;32m-> 1130\u001b[0m \u001b[39mreturn\u001b[39;00m forward_call(\u001b[39m*\u001b[39m\u001b[39minput\u001b[39m, \u001b[39m*\u001b[39m\u001b[39m*\u001b[39mkwargs)\n\u001b[0;32m 1131\u001b[0m \u001b[39m# Do not call functions when jit is used\u001b[39;00m\n\u001b[0;32m 1132\u001b[0m full_backward_hooks, non_full_backward_hooks \u001b[39m=\u001b[39m [], []\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\transformers\\models\\bert\\modeling_bert.py:347\u001b[0m, in \u001b[0;36mBertSelfAttention.forward\u001b[1;34m(self, hidden_states, attention_mask, head_mask, encoder_hidden_states, encoder_attention_mask, past_key_value, output_attentions)\u001b[0m\n\u001b[0;32m 344\u001b[0m attention_scores \u001b[39m=\u001b[39m attention_scores \u001b[39m+\u001b[39m attention_mask\n\u001b[0;32m 346\u001b[0m \u001b[39m# Normalize the attention scores to probabilities.\u001b[39;00m\n\u001b[1;32m--> 347\u001b[0m attention_probs \u001b[39m=\u001b[39m nn\u001b[39m.\u001b[39;49mfunctional\u001b[39m.\u001b[39;49msoftmax(attention_scores, dim\u001b[39m=\u001b[39;49m\u001b[39m-\u001b[39;49m\u001b[39m1\u001b[39;49m)\n\u001b[0;32m 349\u001b[0m \u001b[39m# This is actually dropping out entire tokens to attend to, which might\u001b[39;00m\n\u001b[0;32m 350\u001b[0m \u001b[39m# seem a bit unusual, but is taken from the original Transformer paper.\u001b[39;00m\n\u001b[0;32m 351\u001b[0m attention_probs \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mdropout(attention_probs)\n", + "File \u001b[1;32mb:\\Programs\\Miniconda\\envs\\tdde19\\lib\\site-packages\\torch\\nn\\functional.py:1804\u001b[0m, in \u001b[0;36msoftmax\u001b[1;34m(input, dim, _stacklevel, dtype)\u001b[0m\n\u001b[0;32m 1800\u001b[0m ret \u001b[39m=\u001b[39m (\u001b[39m-\u001b[39m\u001b[39minput\u001b[39m)\u001b[39m.\u001b[39msoftmax(dim, dtype\u001b[39m=\u001b[39mdtype)\n\u001b[0;32m 1801\u001b[0m \u001b[39mreturn\u001b[39;00m ret\n\u001b[1;32m-> 1804\u001b[0m \u001b[39mdef\u001b[39;00m \u001b[39msoftmax\u001b[39m(\u001b[39minput\u001b[39m: Tensor, dim: Optional[\u001b[39mint\u001b[39m] \u001b[39m=\u001b[39m \u001b[39mNone\u001b[39;00m, _stacklevel: \u001b[39mint\u001b[39m \u001b[39m=\u001b[39m \u001b[39m3\u001b[39m, dtype: Optional[DType] \u001b[39m=\u001b[39m \u001b[39mNone\u001b[39;00m) \u001b[39m-\u001b[39m\u001b[39m>\u001b[39m Tensor:\n\u001b[0;32m 1805\u001b[0m \u001b[39mr\u001b[39m\u001b[39m\"\"\"Applies a softmax function.\u001b[39;00m\n\u001b[0;32m 1806\u001b[0m \n\u001b[0;32m 1807\u001b[0m \u001b[39m Softmax is defined as:\u001b[39;00m\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 1827\u001b[0m \n\u001b[0;32m 1828\u001b[0m \u001b[39m \"\"\"\u001b[39;00m\n\u001b[0;32m 1829\u001b[0m \u001b[39mif\u001b[39;00m has_torch_function_unary(\u001b[39minput\u001b[39m):\n", + "\u001b[1;31mKeyboardInterrupt\u001b[0m: " ] } ], "source": [ - "# Train with data loader.\n", + "# Train with data loader\n", + "\n", "criterion = nn.CrossEntropyLoss(reduction=\"none\")\n", "optimizer = optim.Adam(model.parameters(), lr=0.001)\n", "#optimizer = optim.SGD(model.parameters(), lr=0.0001, momentum=0.5)\n", "\n", - "epoch = 5\n", + "epoch = 50\n", "batch_size = 8\n", - "alpha = 0.8\n", + "alpha = 0.1\n", "train_dataloader = DataLoader(train_data, batch_size=batch_size, shuffle=True)\n", "valid_dataloader = DataLoader(valid_data, batch_size=batch_size, shuffle=True)\n", "\n", "model.train()\n", + "loss_train_save = []\n", + "loss_valid_save = []\n", "for e in range(epoch):\n", " train_loss_epoch = 0\n", " valid_loss_epoch = 0\n", @@ -621,23 +667,39 @@ " valid = sample_batched_valid[0]\n", " valid_mask = sample_batched_valid[1]\n", " label_index = sample_batched_valid[2].to(device)\n", - " valid_obj_relations = sample_batched_train[4]\n", + " valid_obj_relations = sample_batched_valid[4]\n", " \n", " # Forward pass\n", " with torch.no_grad():\n", " output = model(valid, valid_mask)\n", " loss = criterion(output, label_index)\n", "\n", - " \n", + " preds = [relations[np.argmax(pred).item()]for pred in output.detach().cpu().numpy()]\n", + " relation_loss = []\n", + " for i in range(len(preds)):\n", + " if prefixes_reverse[\"\".join(preds[i].split(\":\")[0]) + \":\"] + preds[i].split(\":\")[1] in valid_obj_relations[i]:\n", + " relation_loss.append(0)\n", + " else:\n", + " relation_loss.append(1)\n", + "\n", + " relation_loss = torch.FloatTensor(relation_loss).to(device)\n", + " loss = criterion(output, label_index)\n", + " loss = loss * (1-alpha) + (relation_loss) * alpha\n", "\n", " valid_loss_epoch = valid_loss_epoch + loss.mean().item()\n", "\n", - " print(e+1, \"Train\", train_loss_epoch/(i_train+1), \", Valid \", valid_loss_epoch/(i_valid+1))" + " \n", + "\n", + " #valid_loss_epoch = valid_loss_epoch + loss.mean().item()\n", + "\n", + " print(e+1, \"Train\", train_loss_epoch/(i_train+1), \", Valid \", valid_loss_epoch/(i_valid+1))\n", + " loss_train_save.append(train_loss_epoch/(i_train+1))\n", + " loss_valid_save.append(valid_loss_epoch/(i_valid+1))" ] }, { "cell_type": "code", - "execution_count": 53, + "execution_count": 16, "metadata": {}, "outputs": [ { @@ -651,7 +713,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 514/514 [00:00<00:00, 2225.04it/s]\n" + "100%|██████████| 514/514 [00:00<00:00, 1869.07it/s]\n" ] }, { @@ -659,7 +721,7 @@ "output_type": "stream", "text": [ "Finished with batches\n", - "test loss 6.051962852478027\n" + "test loss 6.012964725494385\n" ] } ], @@ -672,25 +734,28 @@ "test_data = MyDataset(test, test_mask, corr_rels_test, ents=ents_test, relations=relations, valid_obj_relations=valid_obj_relations_test)\n", "test_dataloader = DataLoader(test_data, batch_size=len(test_data), shuffle=False)\n", "train_dataloader = DataLoader(train_data, batch_size=len(train_data), shuffle=False)\n", + "valid_dataloader = DataLoader(valid_data, batch_size=len(valid_data), shuffle=False)\n", "\n", "test_batch, test_mask_batch, corr_rels_test_batch, sub_objs_test, valid_obj_relations_test = next(iter(test_dataloader))\n", "train_batch, train_mask_batch, corr_rels_train_batch, sub_objs_train, valid_obj_relations_train = next(iter(train_dataloader))\n", + "valid_batch, valid_mask_batch, corr_rels_valid_batch, sub_objs_valid, valid_obj_relations_valid = next(iter(valid_dataloader))\n", "corr_rels_test_batch = corr_rels_test_batch.to(device)\n", "with torch.no_grad():\n", " output_train = model(train_batch, train_mask_batch)\n", + " output_valid = model(valid_batch, valid_mask_batch)\n", " output_test = model(test_batch, test_mask_batch)\n", " loss = criterion(output_test, corr_rels_test_batch)\n", " print(\"test loss\", loss.mean().item())\n", " loss_gs = []\n", "\n", "output_train = output_train.detach().cpu().numpy()\n", - "#output_test = output_gs_test.detach().cpu().numpy()\n", + "output_valid = output_valid.detach().cpu().numpy()\n", "output_test = output_test.detach().cpu().numpy()\n" ] }, { "cell_type": "code", - "execution_count": 54, + "execution_count": 21, "metadata": {}, "outputs": [ { @@ -698,36 +763,64 @@ "output_type": "stream", "text": [ "Final pred: None No prediction existed in dbpedia relations for (e, r?, e_s/o)\n", - "lowest confidence train 0.116354935\n", - "lowest confidence test 0.104292065\n", - "Accuracy train: 0.11717352415026834\n", - "Accuracy test: 0.06051873198847262\n", - "Accuracy test graphsearch: 0.1786743515850144\n" + "lowest confidence train 0.095232666\n", + "lowest confidence valid 0.095232666\n", + "lowest confidence test 0.08918257\n", + "Accuracy train: 0.2110912343470483\n", + "Accuracy train graphsearch: 0.29427549194991054\n", + "Accuracy valid: 0.075\n", + "Accuracy valid graphsearch: 0.175\n", + "Accuracy test: 0.10086455331412104\n", + "Accuracy test graphsearch: 0.20461095100864554\n" ] } ], "source": [ "\n", - "\n", - "final_preds_test = []\n", - "for j, probs_pred in enumerate(output_test):\n", - " pred = \"\"\n", - " #Sort predictions based on the probability, highest first\n", - " # List contains indices of the sorted predictions\n", - " preds_decending = sorted(range(len(probs_pred)), key=lambda k: probs_pred[k], reverse=True)\n", - " for index in preds_decending:\n", - " if j < len(valid_obj_relations_test):\n", - " if prefixes_reverse[\"\".join(relations[index].split(\":\")[0]) + \":\"] + relations[index].split(\":\")[1] in valid_obj_relations_test[j]:\n", - " pred = relations[index]\n", - " final_preds_test.append(pred)\n", - " #print(\"Final pred:\", pred)\n", - " break \n", + "def predict_only_valid_rel(output, valid_obj_relations):\n", + " final_preds = []\n", + " for j, probs_pred in enumerate(output):\n", + " pred = \"\"\n", + " #Sort predictions based on the probability, highest first\n", + " # List contains indices of the sorted predictions\n", + " preds_decending = sorted(range(len(probs_pred)), key=lambda k: probs_pred[k], reverse=True)\n", + " for index in preds_decending:\n", + " if j < len(valid_obj_relations):\n", + " if prefixes_reverse[\"\".join(relations[index].split(\":\")[0]) + \":\"] + relations[index].split(\":\")[1] in valid_obj_relations[j]:\n", + " pred = relations[index]\n", + " final_preds.append(pred)\n", + " #print(\"Final pred:\", pred)\n", + " break \n", + " \n", + " if pred == \"\":\n", + " final_preds.append(\"None\")\n", + " #print(\"Final pred: None\")\n", + " return final_preds\n", " \n", - " if pred == \"\":\n", - " final_preds_test.append(\"None\")\n", - " #print(\"Final pred: None\")\n", + "\n", + "# final_preds_test = []\n", + "# for j, probs_pred in enumerate(output_test):\n", + "# pred = \"\"\n", + "# #Sort predictions based on the probability, highest first\n", + "# # List contains indices of the sorted predictions\n", + "# preds_decending = sorted(range(len(probs_pred)), key=lambda k: probs_pred[k], reverse=True)\n", + "# for index in preds_decending:\n", + "# if j < len(valid_obj_relations_test):\n", + "# if prefixes_reverse[\"\".join(relations[index].split(\":\")[0]) + \":\"] + relations[index].split(\":\")[1] in valid_obj_relations_test[j]:\n", + "# pred = relations[index]\n", + "# final_preds_test.append(pred)\n", + "# #print(\"Final pred:\", pred)\n", + "# break \n", " \n", + "# if pred == \"\":\n", + "# final_preds_test.append(\"None\")\n", + "# #print(\"Final pred: None\")\n", + "test_gs_preds = predict_only_valid_rel(output_test, valid_obj_relations_test)\n", + "train_gs_preds = predict_only_valid_rel(output_train, valid_obj_relations_train)\n", + "valid_gs_preds = predict_only_valid_rel(output_valid, valid_obj_relations_valid)\n", "\n", + "\n", + " \n", "print(\"Final pred:\", \"None\", \"No prediction existed in dbpedia relations for (e, r?, e_s/o)\")\n", "#print(\"Final preds:\", final_preds)\n", "\n", @@ -736,12 +829,16 @@ "probability_train = [pred[np.argmax(pred)] for pred in output_train]\n", "correct_pred_train = [relations[corr_rels_train_batch.numpy()[i]] for i in range(len(output_train))]\n", "\n", + "prediction_valid = [relations[np.argmax(pred).item()]for pred in output_valid]\n", + "probability_valid = [pred[np.argmax(pred)] for pred in output_valid]\n", + "correct_pred_valid = [relations[corr_rels_valid_batch.numpy()[i]] for i in range(len(output_valid))]\n", "\n", "prediction_test = [relations[np.argmax(pred).item()]for pred in output_test]\n", "probability_test = [pred[np.argmax(pred)] for pred in output_test]\n", "correct_pred_test = [relations[corr_rels_test_batch.cpu().detach().numpy()[i]] for i in range(len(output_test))]\n", "\n", "print(\"lowest confidence train\", min(probability_train))\n", + "print(\"lowest confidence valid\", min(probability_train))\n", "print(\"lowest confidence test\", min(probability_test))\n", "\n", "def accuracy_score(y_true, y_pred):\n", @@ -755,8 +852,19 @@ " return corr_preds/(corr_preds+wrong_preds)\n", "\n", "print(\"Accuracy train:\", accuracy_score(correct_pred_train, prediction_train))\n", + "print(\"Accuracy train graphsearch:\", accuracy_score(correct_pred_train, train_gs_preds))\n", + "print(\"Accuracy valid:\", accuracy_score(correct_pred_valid, prediction_valid))\n", + "print(\"Accuracy valid graphsearch:\", accuracy_score(correct_pred_valid, valid_gs_preds))\n", "print(\"Accuracy test:\", accuracy_score(correct_pred_test, prediction_test))\n", - "print(\"Accuracy test graphsearch:\", accuracy_score(correct_pred_test, final_preds_test))" + "print(\"Accuracy test graphsearch:\", accuracy_score(correct_pred_test, test_gs_preds))\n", + "\n", + "test_df = pd.DataFrame({\"correct_pred\": correct_pred_test, \"prediction\": prediction_test, \"pred_probability\": probability_test, \"gs_pred\": test_gs_preds})\n", + "valid_df = pd.DataFrame({\"correct_pred\": correct_pred_valid, \"prediction\": prediction_valid, \"pred_probability\": probability_valid, \"gs_pred\": valid_gs_preds})\n", + "train_df = pd.DataFrame({\"correct_pred\": correct_pred_train, \"prediction\": prediction_train, \"pred_probability\": probability_train, \"gs_pred\": train_gs_preds})\n", + "\n", + "test_df.to_csv(f\"df_test_a{alpha}_e{epoch}_b{batch_size}.csv\", index=False)\n", + "valid_df.to_csv(f\"df_valid_a{alpha}_e{epoch}_b{batch_size}.csv\", index=False)\n", + "train_df.to_csv(f\"df_train_a{alpha}_e{epoch}_b{batch_size}.csv\", index=False)\n" ] }, { diff --git a/Neural graph module/stats.ipynb b/Neural graph module/stats.ipynb new file mode 100644 index 0000000000000000000000000000000000000000..ed7844b548eef53fa8bbb139f12ebea3fdcc9f0e --- /dev/null +++ b/Neural graph module/stats.ipynb @@ -0,0 +1,96 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 4, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Train accuracy: 0.10086455331412104 gs: 0.20461095100864554\n", + "Valid accuracy: 0.075 gs: 0.175\n", + "Test accuracy: 0.2110912343470483 gs: 0.29427549194991054\n" + ] + } + ], + "source": [ + "import pandas as pd\n", + "\n", + "\n", + "def accuracy_score(y_true, y_pred):\n", + " corr_preds=0\n", + " wrong_preds=0\n", + " for pred, correct in zip(y_pred, y_true):\n", + " if pred == correct:\n", + " corr_preds += 1\n", + " else:\n", + " wrong_preds += 1\n", + " return corr_preds/(corr_preds+wrong_preds)\n", + "\n", + "# read dataframe from csv file\n", + "def read_test_valid_train_csv(path_train, path_valid, path_test):\n", + " test_df = pd.read_csv(path_test)\n", + " valid_df = pd.read_csv(path_valid)\n", + " train_df = pd.read_csv(path_train)\n", + "\n", + " return train_df, valid_df, test_df\n", + "\n", + "\n", + "def eval_dfs(train_df, valid_df, test_df):\n", + " test_acc = accuracy_score(test_df[\"correct_pred\"], test_df[\"prediction\"])\n", + " valid_acc = accuracy_score(valid_df[\"correct_pred\"], valid_df[\"prediction\"])\n", + " train_acc = accuracy_score(train_df[\"correct_pred\"], train_df[\"prediction\"])\n", + " test_acc_gs = accuracy_score(test_df[\"correct_pred\"], test_df[\"gs_pred\"])\n", + " valid_acc_gs = accuracy_score(valid_df[\"correct_pred\"], valid_df[\"gs_pred\"])\n", + " train_acc_gs = accuracy_score(train_df[\"correct_pred\"], train_df[\"gs_pred\"])\n", + "\n", + "\n", + " return train_acc, valid_acc, test_acc, train_acc_gs, valid_acc_gs, test_acc_gs\n", + "\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "test_df, valid_df, train_df = read_test_valid_train_csv(\"df_train_a0.1_e50_b8.csv\", \"df_valid_a0.1_e50_b8.csv\", \"df_test_a0.1_e50_b8.csv\")\n", + "train_acc, valid_acc, test_acc, train_acc_gs, valid_acc_gs, test_acc_gs = eval_dfs(train_df, valid_df, test_df)\n", + "\n", + "print(\"Train accuracy: \", train_acc, \"gs:\", train_acc_gs)\n", + "print(\"Valid accuracy: \", valid_acc, \"gs:\", valid_acc_gs)\n", + "print(\"Test accuracy: \", test_acc, \"gs:\", test_acc_gs)" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3.10.4 ('tdde19')", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.4" + }, + "orig_nbformat": 4, + "vscode": { + "interpreter": { + "hash": "8e4aa0e1a1e15de86146661edda0b2884b54582522f7ff2b916774ba6b8accb1" + } + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/Neural graph module/test_predictions.csv b/Neural graph module/test_predictions.csv new file mode 100644 index 0000000000000000000000000000000000000000..5a8e4587c84bc4ec2c3402bd91828eef8ca9719e --- /dev/null +++ b/Neural graph module/test_predictions.csv @@ -0,0 +1,348 @@ +correct_pred,prediction,pred_probability,gs_pred +dbo:associatedband,dbp:artist,0.8587912,dbp:artist +dbp:canonizedby,dbp:canonizedby,0.7482736,dbp:canonizedby +dbo:ingredient,dbo:ingredient,0.8449717,dbo:ingredient +dbp:characters,dbo:creator,0.5272995,dbp:characters +dbo:stadium,dbp:owner,0.2646646,dbp:league +dbo:broadcastarea,dbo:country,0.40996015,dbp:area +dbo:occupation,dbp:education,0.4218032,dbo:occupation +dbp:starring,dbo:director,0.34308416,dbo:director 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