diff --git a/plotFigures.m b/plotFigures.m index 7a86f2ca235ad57593e5c03ebc07bdf603da3f46..aaefc35912cb498cf6abbd0a56cf360813fff19b 100644 --- a/plotFigures.m +++ b/plotFigures.m @@ -84,7 +84,7 @@ plotArea(colorMA,simM1,sim_time); yticks([0:1:5]) xlabel('time (min)') -ylabel('mh/kg/min') +ylabel('mg/kg/min') set(gca,'FontSize',20); sgtitle('Glucose uptake in muscle and adipose tissue combined','FontSize',20) legend('M0','M1','data') @@ -120,7 +120,7 @@ plotErrorbar(colorM,DATA.time,DATA.Muscle,DATA.SEM1); hold on plotErrorbar(colorA,DATA.time,DATA.Adipose,DATA.SEM2); xlabel('time (min)') -ylabel('mh/kg/min') +ylabel('mg/kg/min') legend([m,a],'muscle tissue','adipose tissue') set(gca,'FontSize',20); xticks([0:200:400]); @@ -165,13 +165,12 @@ sim_muscleB = sim.variablevalues(:,ismember(IQMvariables(model),'U_idm'))'; [sampledParams] = sample_params(100,allParams); boundries=get_maxmin(sim_time, model, squeeze(sampledParams),paramsFixed); +% adipose figure() set(gcf, 'Units', 'Normalized', 'OuterPosition', [0, 0.04, 0.4, 0.7]); figSets() sgtitle('Glucose uptake in adipose tissue','FontSize',20) -yticks([0:1:3]); -%M2a subplot(1,2,1); plotSim(colorA,sim_adiposeA,sim_time); hold on plotErrorbar(colorA,DATA.time,DATA.Adipose,DATA.SEM2); @@ -180,7 +179,6 @@ yticks([0:1:3]) set(gca,'FontSize',15); set(gca,'linewidth',1.4); -% M2b subplot(1,2,2); plotUncertainty(colorA,boundries,sim_time,'a'); hold on plotSim(colorA,sim_adiposeB,sim_time); @@ -196,13 +194,13 @@ figure() set(gcf, 'Units', 'Normalized', 'OuterPosition', [0, 0.04, 0.4, 0.7]); figSets() sgtitle('Glucose uptake in muscle tissue','FontSize',20) -yticks([0:1:3]); subplot(1,2,1); plotSim(colorM,sim_muscleA,sim_time); hold on plotErrorbar(colorM,DATA.time,DATA.Muscle,DATA.SEM1); title('M2a','FontSize',12); yticks([0:1:3]) +ylim([0 3.5]) set(gca,'FontSize',15); set(gca,'linewidth',1.4); @@ -212,9 +210,10 @@ plotErrorbar(colorM,DATA.time,DATA.Muscle,DATA.SEM1); plotSim(colorM,sim_muscleB,sim_time); title('M2b','FontSize',12); yticks([0:1:3]) +ylim([0 3.5]) set(gca,'FontSize',15); -legend('uncertainty','data','simulation','Location', 'northeast') set(gca,'linewidth',1.4) +legend('uncertainty','data','simulation','Location', 'northeast') %% fig5 @@ -230,8 +229,8 @@ iozzo.clearance=100*iozzo.clearance/iozzo.clearance(1); [~,paramsAll]=IQMparameters(model); [paramsBI,paramsI,paramsB,params]=deal(paramsAll); -params(90) = 0; % removing insulin infusion, parameter INS_inf -paramsB(90) = 0; % removing insulin infusion, parameter INS_inf +params(90) = 0; +paramsB(90) = 0; paramsBI(99) = 30*paramsBI(99); % adding bradykinin, increases blood foow two-folds [initsI] = simulateSteadyState(model, paramsI);